Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| KIRC | rs77436553 | chr21:47759343 | G/A | 3.67E-5 | 500 | 37.03 | 43.25 | 17.23 | KM Plot |
| KIRC | rs77448323 | chr11:34774834 | G/T | 9.16E-8 | 506 | 37.6 | 34.47 | 3.3 | KM Plot |
| KIRC | rs77461667 | chr19:46341177 | G/A | 7.48E-8 | 506 | 38.1 | 28.17 | 1.77 | KM Plot |
| KIRC | rs77466193 | chr16:15844781 | C/T | 4.54E-6 | 506 | 37.35 | 37.77 | 3.67 | KM Plot |
| KIRC | rs7749414 | chr6:26074884 | G/T | 1.08E-8 | 505 | 37.73 | 33.93 | 3.37 | KM Plot |
| KIRC | rs77535550 | chr11:34925752 | T/C | 5.45E-13 | 507 | 37.6 | 31.5 | 3.48 | KM Plot |
| KIRC | rs77588767 | chr19:46326472 | G/C | 7.21E-8 | 500 | 38.05 | 28.65 | 1.77 | KM Plot |
| KIRC | rs77640769 | chr9:92165923 | C/G | 6.03E-5 | 505 | 37.18 | 46.6 | 10.62 | KM Plot |
| KIRC | rs77652032 | chr8:17309665 | A/G | 1.59E-8 | 502 | 36.97 | 41 | 3.1 | KM Plot |
| KIRC | rs77755601 | chr22:49520880 | G/A | 1.06E-13 | 494 | 36.48 | 47.83 | 1.97 | KM Plot |
| KIRC | rs77785715 | chr11:34771805 | G/C | 9.27E-8 | 504 | 37.77 | 25.53 | 3.3 | KM Plot |
| KIRC | rs77799462 | chr19:46342500 | G/A | 7.48E-8 | 506 | 38.1 | 28.17 | 1.77 | KM Plot |
| KIRC | rs77890593 | chr16:2943479 | C/T | 2.16E-5 | 501 | 36.65 | 39.23 | 1.98 | KM Plot |
| KIRC | rs77930368 | chr22:49520561 | T/C | 9.18E-14 | 497 | 36.72 | 47.63 | 1.97 | KM Plot |
| KIRC | rs77936947 | chr4:123052186 | G/C | 2.15E-11 | 508 | 36.87 | 48.83 | 1.97 | KM Plot |